Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs9791629 chr7:16500409 C/T 2.8E-8 503 25.5 31.23 31.7 KM Plot
THCA rs9807088 chr17:42589920 A/G 8.0E-5 502 31.47 36.4 53.23 KM Plot
THCA rs9832142 chr3:122429938 C/T 7.21E-6 494 20.87 26.57 32.07 KM Plot
THCA rs9835184 chr3:122545075 T/C 1.3E-7 501 32.03 23.7 18.38 KM Plot
THCA rs9841111 chr3:122532829 A/T 1.19E-7 503 18.38 25.17 31.98 KM Plot
THCA rs984376 chr3:97347646 C/T 7.4E-6 503 31.67 31.2 33.9 KM Plot
THCA rs9844987 chr3:69170012 T/C 4.77E-7 495 31.98 30.27 14.62 KM Plot
THCA rs9847351 chr3:122550989 G/A 1.32E-7 500 32.07 23.7 18.38 KM Plot
THCA rs9853769 chr3:97065836 G/A 0.000103 500 31.47 32.57 41.97 KM Plot
THCA rs9855669 chr3:122510763 A/C 6.25E-6 500 32.07 26.57 20.87 KM Plot
THCA rs9872606 chr3:122448551 C/T 6.01E-6 502 31.98 25.17 20.87 KM Plot
THCA rs9886422 chr8:60174258 G/A 6.55E-5 501 31.93 29.5 20.5 KM Plot
THCA rs9953548 chr18:76640601 C/T 0.0001 496 31.68 31.27 23.83 KM Plot
THYM rs10001190 chr4:6284633 C/T 7.77E-8 119 50.1 38.83 23.63 KM Plot
THYM rs10003639 chr4:9591535 G/C 9.35E-9 117 41.77 42.9 12.63 KM Plot